List of my pub­li­ca­tions. You can also check my google scholar page

2021

  1. Theory and simulations of condensin mediated loop extrusion in DNA ↗
    Takaki, Ryota., Dey, Atreya., Shi, Guang., Thirumalai, D.. Nature Communications (2021)
  2. Random First Order Transition Theory for Glassy Dynamics in a Single Condensed Polymer ↗
    Cho, Hyun Woo., Shi, Guang., Kirkpatrick, T. R.., Thirumalai, D.. Physical Review Letters (2021)
  3. Phase Transitions of Oppositely Charged Colloidal Particles Driven by Alternating Current Electric Field ↗
    Li, Bin., Wang, Yong-Lei., Shi, Guang., Gao, Yangyang., Shi, Xinghua., Woodward, Clifford E.., Forsman, Jan. ACS Nano (2021)
  4. From Hi-C Contact Map to Three-Dimensional Organization of Interphase Human Chromosomes ↗
    Shi, Guang., Thirumalai, D.. Physical Review X (2021)
  5. Chromatin dynamics controls epigenetic domain formation preprint ↗
    Katava, Marina., Shi, Guang., Thirumalai, D.. (2021)

2019

  1. Conformational heterogeneity in human interphase chromosome organization reconciles the FISH and Hi-C paradox ↗
    Shi, Guang., Thirumalai, D.. Nature Communications (2019)

2018

  1. Interphase human chromosome exhibits out of equilibrium glassy dynamics ↗
    Shi, Guang., Liu, Lei., Hyeon, Changbong., Thirumalai, D.. Nature Communications (2018)
  2. Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci ↗
    Liu, Lei., Shi, Guang., Thirumalai, D.., Hyeon, Changbong. PLOS Computational Biology (2018)

2017

  1. Chromatin Is Stretched but Intact When the Nucleus Is Squeezed through Constrictions ↗
    Thirumalai, D.., Shi, Guang. Biophysical Journal (2017)

List of my talks and posters.

  1. talk From Hi-C Contact Map to Three-dimensional Organization of Interphase Human Chromosomes
    MIT Genome Architecture and Function Virtual Workshop. Jun, 2020.
  2. talk A Polymer Model For Predicating Three-Dimensional Organization Change From Structural Variations
    CSHL Genome Organization & Nuclear Function. May, 2020.
  3. talk Conformational Heterogeneity In Human Interphase Chromosome Organization Reconciles The FISH And Hi-C Paradox
    APS March Meeting (meeting canceled due to the Covid-19). Mar, 2020. Slides
  4. talk Conformational Heterogeneity Of Human Interphase Chromosomes
    iPoLS Rice-UT Retreat. Nov, 2019.
  5. poster Interphase Human Chromosome Exhibits Out Of Equilibrium Glassy Dynamics
    CSHL Single Biomolecules. Sep, 2018.
  6. poster Glass-Like Dynamics In The Folded State Of Human Interphase Chromosome
    APS March Meeting. Mar, 2017.