List of my pub­li­ca­tions. You can also check my google scholar page


  1. Transcription-induced active forces suppress chromatin motion by inducing a transient disorder-to-order transition preprint
    Shin, Sucheol., Cho, Hyun Woo., Shi, Guang., Thirumalai, D.. (2022)
  2. A method to predict 3D structural ensembles of chromatins from pairwise distances: Applications to Interphase Chromosomes and Structural Variants preprint
    Shi, Guang., Thirumalai, D.. (2022)


  1. Theory and simulations of condensin mediated loop extrusion in DNA
    Takaki, Ryota., Dey, Atreya., Shi, Guang., Thirumalai, D.. Nature Communications (2021)
  2. Random First Order Transition Theory for Glassy Dynamics in a Single Condensed Polymer
    Cho, Hyun Woo., Shi, Guang., Kirkpatrick, T. R.., Thirumalai, D.. Physical Review Letters (2021)
  3. Phase Transitions of Oppositely Charged Colloidal Particles Driven by Alternating Current Electric Field
    Li, Bin., Wang, Yong-Lei., Shi, Guang., Gao, Yangyang., Shi, Xinghua., Woodward, Clifford E.., Forsman, Jan. ACS Nano (2021)
  4. From Hi-C Contact Map to Three-Dimensional Organization of Interphase Human Chromosomes
    Shi, Guang., Thirumalai, D.. Physical Review X (2021)
  5. Chromatin dynamics controls epigenetic domain formation preprint
    Katava, Marina., Shi, Guang., Thirumalai, D.. (2021)


  1. Conformational heterogeneity in human interphase chromosome organization reconciles the FISH and Hi-C paradox
    Shi, Guang., Thirumalai, D.. Nature Communications (2019)


  1. Interphase human chromosome exhibits out of equilibrium glassy dynamics
    Shi, Guang., Liu, Lei., Hyeon, Changbong., Thirumalai, D.. Nature Communications (2018)
  2. Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
    Liu, Lei., Shi, Guang., Thirumalai, D.., Hyeon, Changbong. PLOS Computational Biology (2018)


  1. Chromatin Is Stretched but Intact When the Nucleus Is Squeezed through Constrictions
    Thirumalai, D.., Shi, Guang. Biophysical Journal (2017)

List of my talks and posters.

  1. talk Liquid state theory study of the microstructure and phase behavior of protein condensates
    APS March Meeting. Mar, 2022.
  2. talk From Hi-C Contact Map to Three-dimensional Organization of Interphase Human Chromosomes
    MIT Genome Architecture and Function Virtual Workshop. Jun, 2020.
  3. talk A Polymer Model For Predicating Three-Dimensional Organization Change From Structural Variations
    CSHL Genome Organization & Nuclear Function. May, 2020.
  4. talk Conformational Heterogeneity In Human Interphase Chromosome Organization Reconciles The FISH And Hi-C Paradox
    APS March Meeting (meeting canceled due to the Covid-19). Mar, 2020. Slides
  5. talk Conformational Heterogeneity Of Human Interphase Chromosomes
    iPoLS Rice-UT Retreat. Nov, 2019.
  6. poster Interphase Human Chromosome Exhibits Out Of Equilibrium Glassy Dynamics
    CSHL Single Biomolecules. Sep, 2018.
  7. poster Glass-Like Dynamics In The Folded State Of Human Interphase Chromosome
    APS March Meeting. Mar, 2017.